STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z169_04425E3 ubiquitin/ISG15 ligase TRIM25. (525 aa)    
Predicted Functional Partners:
IFIH1
Interferon-induced helicase C domain-containing protein 1.
   
 0.719
DDX58
Putative ATP-dependent RNA helicase DDX58.
   
 0.663
Z169_12471
Interferon-induced, double-stranded RNA-activated protein kinase.
   
 0.599
UBB
Polyubiquitin-C.
   
 0.548
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
  0.531
Z169_12816
Interferon-induced protein with tetratricopeptide repeats 5.
    
 0.492
Z169_11470
Inducible T-cell costimulator.
   
 0.459
Z169_11016
Interferon-induced GTP-binding protein Mx; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 
 0.417
DDX41
Putative ATP-dependent RNA helicase DDX41.
    
 0.412
RNASEL
2-5A-dependent ribonuclease.
    
 0.407
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.