STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS1PseudoU_synth_1 domain-containing protein. (328 aa)    
Predicted Functional Partners:
TRUB1
Putative tRNA pseudouridine synthase 1.
   
 0.854
WDR4
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
 
 0.846
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 0.826
PUS7
Pseudouridylate synthase 7.
   
 
 0.740
TRUB2
Putative tRNA pseudouridine synthase 2.
   
 0.719
SEC63
Translocation protein SEC63.
      
 0.698
Z169_09710
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
  
 
 0.683
TRMT1L
TRMT1-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
   
 
 0.672
RPUSD4
RNA pseudouridylate synthase domain-containing protein 4.
  
  
 0.664
NSUN2
tRNA (Cytosine(34)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.660
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.