STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGFBRAP1Transforming growth factor-beta receptor-associated protein 1. (864 aa)    
Predicted Functional Partners:
VPS11
Vacuolar protein sorting-associated protein 11.
   
 0.994
Z169_11861
Vacuolar protein sorting-associated protein 16.
   
 0.994
VPS18
Vacuolar protein sorting-associated protein 18.
   
 0.993
VPS41
Vacuolar protein sorting-associated protein 41.
   
 0.990
VPS39
Vam6/Vps39-like.
    
 
0.955
VPS8
Vacuolar protein sorting-associated protein 8.
   
 
 0.929
VPS33A
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.907
Z169_14372
Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.907
CCZ1
Vacuolar fusion protein CCZ1.
    
 
 0.779
YKT6
Synaptobrevin YKT6; Belongs to the synaptobrevin family.
    
 
 0.696
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.