STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP9Matrix metalloproteinase-9. (420 aa)    
Predicted Functional Partners:
Z169_11972
Metalloproteinase inhibitor 3.
   
 0.878
CD44
CD44 antigen.
   
 0.858
THBS1
Thrombospondin-1.
   
 0.721
KITLG
Kit ligand.
     
 0.710
TIMP4
Metalloproteinase inhibitor 4.
    
 0.694
SPP1
Osteopontin.
     
 0.687
THBS2
Thrombospondin-2.
   
 0.683
MMP7
Stromelysin-1.
  
 
0.643
COL15A1
Collagen alpha-1(XV) chain.
   
 0.622
SCUBE2
Signal peptide, CUB and EGF-like domain-containing protein 2.
   
 0.598
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.