STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B6Pre-mRNA branch site protein p14. (125 aa)    
Predicted Functional Partners:
PHF5A
PHD finger-like domain-containing protein 5A.
   
 0.999
SF3B1
Splicing factor 3B subunit 1.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
    
 0.999
SF3B4
Splicing factor 3B subunit 4.
    
 0.998
SF3A2
Splicing factor 3A subunit 2.
   
 0.990
MFAP1
Microfibrillar-associated protein 1.
   
   0.972
PRPF6
Pre-mRNA-processing factor 6.
    
   0.971
Z169_03064
Transcription elongation regulator 1-like.
    
   0.971
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.961
SNRPB2
U2 small nuclear ribonucleoprotein B.
   
 0.958
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.