STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCD2Uncharacterized protein. (345 aa)    
Predicted Functional Partners:
SEC63
Translocation protein SEC63.
      
 0.698
ICT1
RF_PROK_I domain-containing protein.
    
 
 0.525
MRPL16
Ribosomal_L16 domain-containing protein.
   
   0.499
MRPL33
Uncharacterized protein.
    
   0.489
MRPL40
Uncharacterized protein.
   
   0.484
MRPL13
Uncharacterized protein.
   
   0.472
MRPL22
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
    
   0.459
MRPL3
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
   0.452
MRPL46
Uncharacterized protein.
   
   0.447
MALSU1
Mitochondrial assembly of ribosomal large subunit protein 1.
    
 
 0.446
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.