STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z169_01680Protein CASC3. (510 aa)    
Predicted Functional Partners:
Z169_08697
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.999
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 0.997
MAGOH
Protein mago nashi 2.
    
 0.984
UPF1
Regulator of nonsense transcripts 1.
    
 0.966
UPF3A
Regulator of nonsense transcripts 3A.
    
 0.952
Z169_11736
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.908
UPF2
Regulator of nonsense transcripts 2.
    
 0.841
AQR
Intron-binding protein aquarius.
    
 
 0.804
RNPS1
RNA-binding protein with serine-rich domain 1.
     
 0.800
Z169_13360
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 0.790
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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