MSI1 protein (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MSI1

RNA-binding protein Musashi 1. (327 aa)

Predicted Functional Partners:

DAZAP1

0.907

ZC3H14

0.701

Z169_04779

0.660

TNPO1

0.596

TRA2A

0.516

SRSF2

0.498

CSTF3

0.445

ZCRB1

0.434

Z169_10657

0.420

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSTF3	DAZAP1	A0A091JRS8	A0A091JB66	Cleavage stimulation factor subunit 3.	DAZ-associated protein 1.	0.445
CSTF3	MSI1	A0A091JRS8	A0A091JHS9	Cleavage stimulation factor subunit 3.	RNA-binding protein Musashi 1.	0.445
CSTF3	Z169_04779	A0A091JRS8	A0A091IQG4	Cleavage stimulation factor subunit 3.	Cleavage stimulation factor subunit 2.	0.997
CSTF3	Z169_10657	A0A091JRS8	A0A091IVY3	Cleavage stimulation factor subunit 3.	Uncharacterized protein.	0.954
DAZAP1	CSTF3	A0A091JB66	A0A091JRS8	DAZ-associated protein 1.	Cleavage stimulation factor subunit 3.	0.445
DAZAP1	MSI1	A0A091JB66	A0A091JHS9	DAZ-associated protein 1.	RNA-binding protein Musashi 1.	0.907
DAZAP1	TNPO1	A0A091JB66	A0A091JCJ2	DAZ-associated protein 1.	Transportin-1.	0.600
DAZAP1	TRA2A	A0A091JB66	A0A091J7M6	DAZ-associated protein 1.	Transformer-2 protein alpha.	0.471
DAZAP1	Z169_04779	A0A091JB66	A0A091IQG4	DAZ-associated protein 1.	Cleavage stimulation factor subunit 2.	0.660
DAZAP1	Z169_10657	A0A091JB66	A0A091IVY3	DAZ-associated protein 1.	Uncharacterized protein.	0.420
DAZAP1	ZC3H14	A0A091JB66	A0A091JWV7	DAZ-associated protein 1.	Zinc finger CCCH domain-containing protein 14.	0.701
DAZAP1	ZCRB1	A0A091JB66	A0A091JBU4	DAZ-associated protein 1.	Zinc finger CCHC-type and RNA-binding motif-containing protein 1.	0.404
MSI1	CSTF3	A0A091JHS9	A0A091JRS8	RNA-binding protein Musashi 1.	Cleavage stimulation factor subunit 3.	0.445
MSI1	DAZAP1	A0A091JHS9	A0A091JB66	RNA-binding protein Musashi 1.	DAZ-associated protein 1.	0.907
MSI1	SRSF2	A0A091JHS9	A0A091J5R6	RNA-binding protein Musashi 1.	Serine/arginine-rich splicing factor 2.	0.498
MSI1	TNPO1	A0A091JHS9	A0A091JCJ2	RNA-binding protein Musashi 1.	Transportin-1.	0.596
MSI1	TRA2A	A0A091JHS9	A0A091J7M6	RNA-binding protein Musashi 1.	Transformer-2 protein alpha.	0.516
MSI1	Z169_04779	A0A091JHS9	A0A091IQG4	RNA-binding protein Musashi 1.	Cleavage stimulation factor subunit 2.	0.660
MSI1	Z169_10657	A0A091JHS9	A0A091IVY3	RNA-binding protein Musashi 1.	Uncharacterized protein.	0.420
MSI1	ZC3H14	A0A091JHS9	A0A091JWV7	RNA-binding protein Musashi 1.	Zinc finger CCCH domain-containing protein 14.	0.701