STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MESDC1Mesoderm development candidate 1. (337 aa)    
Predicted Functional Partners:
VCL
Vinculin.
   
 0.956
PIP5K1C
Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma.
    
 0.816
Z169_14579
Paxillin; Belongs to the paxillin family.
   
 0.809
APBB1IP
Amyloid beta A4 protein-binding family B member 1-interacting protein.
    
 0.785
ITGB5
Integrin beta.
   
 0.740
ITGB3
Integrin beta.
   
 0.736
PTK2
Focal adhesion kinase 1.
    
 0.725
FLNB
Filamin-B.
   
 
 0.712
NEDD9
Enhancer of filamentation 1.
     
 0.711
CTNNA1
Catenin alpha-1.
   
 0.704
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.