STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC27Tetratricopeptide repeat protein 27. (814 aa)    
Predicted Functional Partners:
PWP2
Periodic tryptophan protein 2.
   
    0.923
WDR36
WD repeat-containing protein 36.
   
    0.836
WDR3
WD repeat-containing protein 3.
   
  
 0.775
NAT10
N-acetyltransferase 10.
   
    0.760
TBL3
Transducin beta-like 3.
   
  
 0.738
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.712
POLR3B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.693
Z169_11411
RRP12-like.
   
    0.614
UTP18
U3 small nucleolar RNA-associated protein 18.
   
    0.583
TSR1
Pre-rRNA-processing protein TSR1.
   
    0.582
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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