STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain-containing protein 6. (372 aa)    
Predicted Functional Partners:
Z169_04164
Ankyrin-3.
 
      0.618
RET
Proto-oncogene tyrosine-protein kinase receptor Ret.
      
 0.515
PDXDC1
Pyridoxal-dependent decarboxylase domain-containing protein 1.
      
 0.499
PPME1
Protein phosphatase methylesterase 1.
      
 0.491
SNRNP48
U11/U12 small nuclear ribonucleoprotein 48 kDa protein.
      
 0.489
Z169_03685
Serine/threonine-protein phosphatase 4 regulatory subunit 1.
    
 
 0.426
Z169_05784
Serine/threonine-protein phosphatase 4 regulatory subunit 1.
    
 
 0.426
KDELR2
ER lumen protein-retaining receptor.
      
 0.412
JMJD4
JmjC domain-containing protein 4.
      
 0.400
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.