A0A5C3Q0C2 protein (Pterula gracilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3Q0C2

Sortilin. (598 aa)

Predicted Functional Partners:

A0A5C3QNP1

0.763

A0A5C3QWP6

0.729

A0A5C3R741

0.700

A0A5C3QQ87

0.695

A0A5C3QV92

0.689

A0A5C3QUP8

0.688

A0A5C3R367

0.683

A0A5C3Q535

0.676

A0A5C3QQM5

0.675

A0A5C3QS38

0.675

Your Current Organism:

Pterula gracilis

NCBI taxonomy Id: 1884261
Other names: Hirsutella gracilis, P. gracilis, Pistillaria gracilis, Typhula gracilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3Q0C2	A0A5C3Q535	Sortilin.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.676
A0A5C3Q0C2	A0A5C3QNP1	Sortilin.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.763
A0A5C3Q0C2	A0A5C3QQ87	Sortilin.	Proteasome subunit beta.	0.695
A0A5C3Q0C2	A0A5C3QQM5	Sortilin.	Proteasome subunit beta.	0.675
A0A5C3Q0C2	A0A5C3QS38	Sortilin.	Proteasome subunit alpha type.	0.675
A0A5C3Q0C2	A0A5C3QUP8	Sortilin.	AP-1 complex subunit gamma.	0.688
A0A5C3Q0C2	A0A5C3QV92	Sortilin.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.689
A0A5C3Q0C2	A0A5C3QWP6	Sortilin.	Uncharacterized protein.	0.729
A0A5C3Q0C2	A0A5C3R367	Sortilin.	Vps5 C terminal like-domain-containing protein.	0.683
A0A5C3Q0C2	A0A5C3R741	Sortilin.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.700
A0A5C3Q535	A0A5C3Q0C2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sortilin.	0.676
A0A5C3Q535	A0A5C3QNP1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.487
A0A5C3Q535	A0A5C3QUP8	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	AP-1 complex subunit gamma.	0.415
A0A5C3Q535	A0A5C3R367	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vps5 C terminal like-domain-containing protein.	0.974
A0A5C3QNP1	A0A5C3Q0C2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Sortilin.	0.763
A0A5C3QNP1	A0A5C3Q535	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.487
A0A5C3QNP1	A0A5C3QUP8	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma.	0.981
A0A5C3QNP1	A0A5C3QV92	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.899
A0A5C3QNP1	A0A5C3QWP6	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.665
A0A5C3QNP1	A0A5C3R367	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Vps5 C terminal like-domain-containing protein.	0.770