STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3QG95RRM domain-containing protein. (135 aa)    
Predicted Functional Partners:
A0A5C3QWL3
Matrin-type domain-containing protein.
   
 0.978
A0A5C3R0S8
PSP domain-containing protein.
   
 0.973
A0A5C3R588
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.972
A0A5C3QL38
Small nuclear ribonucleo protein.
    
 0.971
A0A5C3QVZ4
CPSF A subunit region-domain-containing protein.
   
 0.971
A0A5C3QXA3
PHF5-like protein.
    
 0.969
A0A5C3QXZ3
Pre-mRNA splicing factor PRP21 like protein-domain-containing protein.
   
 0.969
A0A5C3QWG1
C2H2-type domain-containing protein.
    
 0.968
A0A5C3QQ89
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.965
A0A5C3R1L0
Leucine-rich repeat-domain-containing protein.
    
 0.964
Your Current Organism:
Pterula gracilis
NCBI taxonomy Id: 1884261
Other names: Hirsutella gracilis, P. gracilis, Pistillaria gracilis, Typhula gracilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.