A0A5C3QY48 protein (Pterula gracilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3QY48

SprT-like family-domain-containing protein. (424 aa)

Predicted Functional Partners:

A0A5C3R0I1

0.820

A0A5C3R3L9

0.820

A0A5C3QZC0

0.771

A0A5C3Q7G7

0.747

A0A5C3QX22

0.747

A0A5C3QZI2

0.734

A0A5C3QD57

0.728

A0A5C3R4K1

0.713

A0A5C3Q0D6

0.690

A0A5C3Q1C6

0.690

Your Current Organism:

Pterula gracilis

NCBI taxonomy Id: 1884261
Other names: Hirsutella gracilis, P. gracilis, Pistillaria gracilis, Typhula gracilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3Q0D6	A0A5C3Q7G7	A49-like RNA polymerase I associated factor-domain-containing protein.	HIT-like protein.	0.649
A0A5C3Q0D6	A0A5C3QD57	A49-like RNA polymerase I associated factor-domain-containing protein.	Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase.	0.610
A0A5C3Q0D6	A0A5C3QX22	A49-like RNA polymerase I associated factor-domain-containing protein.	HIT-like protein.	0.636
A0A5C3Q0D6	A0A5C3QY48	A49-like RNA polymerase I associated factor-domain-containing protein.	SprT-like family-domain-containing protein.	0.690
A0A5C3Q0D6	A0A5C3QZC0	A49-like RNA polymerase I associated factor-domain-containing protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.972
A0A5C3Q0D6	A0A5C3QZI2	A49-like RNA polymerase I associated factor-domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
A0A5C3Q0D6	A0A5C3R0I1	A49-like RNA polymerase I associated factor-domain-containing protein.	BTB domain-containing protein.	0.660
A0A5C3Q0D6	A0A5C3R3L9	A49-like RNA polymerase I associated factor-domain-containing protein.	Transcription factor TFIID-domain-containing protein.	0.669
A0A5C3Q0D6	A0A5C3R4K1	A49-like RNA polymerase I associated factor-domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
A0A5C3Q1C6	A0A5C3Q7G7	A49-like RNA polymerase I associated factor-domain-containing protein.	HIT-like protein.	0.649
A0A5C3Q1C6	A0A5C3QD57	A49-like RNA polymerase I associated factor-domain-containing protein.	Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase.	0.610
A0A5C3Q1C6	A0A5C3QX22	A49-like RNA polymerase I associated factor-domain-containing protein.	HIT-like protein.	0.636
A0A5C3Q1C6	A0A5C3QY48	A49-like RNA polymerase I associated factor-domain-containing protein.	SprT-like family-domain-containing protein.	0.690
A0A5C3Q1C6	A0A5C3QZC0	A49-like RNA polymerase I associated factor-domain-containing protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.972
A0A5C3Q1C6	A0A5C3QZI2	A49-like RNA polymerase I associated factor-domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
A0A5C3Q1C6	A0A5C3R0I1	A49-like RNA polymerase I associated factor-domain-containing protein.	BTB domain-containing protein.	0.660
A0A5C3Q1C6	A0A5C3R3L9	A49-like RNA polymerase I associated factor-domain-containing protein.	Transcription factor TFIID-domain-containing protein.	0.669
A0A5C3Q1C6	A0A5C3R4K1	A49-like RNA polymerase I associated factor-domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
A0A5C3Q7G7	A0A5C3Q0D6	HIT-like protein.	A49-like RNA polymerase I associated factor-domain-containing protein.	0.649
A0A5C3Q7G7	A0A5C3Q1C6	HIT-like protein.	A49-like RNA polymerase I associated factor-domain-containing protein.	0.649