A0A5C3QYA6 protein (Pterula gracilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5C3QYA6

Uncharacterized protein. (207 aa)

Predicted Functional Partners:

A0A5C3Q6B6

0.988

A0A5C3QH79

0.976

A0A5C3QMW8

0.962

A0A5C3QGW0

0.952

A0A5C3R0Q9

0.951

A0A5C3QP45

0.950

A0A5C3QWL7

0.950

A0A5C3QL87

0.944

A0A5C3QQH1

0.933

A0A5C3QFY3

0.932

Your Current Organism:

Pterula gracilis

NCBI taxonomy Id: 1884261
Other names: Hirsutella gracilis, P. gracilis, Pistillaria gracilis, Typhula gracilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3Q6B6	A0A5C3QFY3	DUF663-domain-containing protein.	Nop domain-containing protein.	0.996
A0A5C3Q6B6	A0A5C3QGW0	DUF663-domain-containing protein.	Utp14 protein-domain-containing protein.	0.998
A0A5C3Q6B6	A0A5C3QH79	DUF663-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
A0A5C3Q6B6	A0A5C3QL87	DUF663-domain-containing protein.	Brix-domain-containing protein.	0.995
A0A5C3Q6B6	A0A5C3QMW8	DUF663-domain-containing protein.	Small-subunit processome.	0.992
A0A5C3Q6B6	A0A5C3QP45	DUF663-domain-containing protein.	Sas10 C-terminal domain-containing protein.	0.998
A0A5C3Q6B6	A0A5C3QQH1	DUF663-domain-containing protein.	NUC153 domain-containing protein.	0.998
A0A5C3Q6B6	A0A5C3QWL7	DUF663-domain-containing protein.	WD40-repeat-containing domain protein.	0.998
A0A5C3Q6B6	A0A5C3QYA6	DUF663-domain-containing protein.	Uncharacterized protein.	0.988
A0A5C3Q6B6	A0A5C3R0Q9	DUF663-domain-containing protein.	Uncharacterized protein.	0.995
A0A5C3QFY3	A0A5C3Q6B6	Nop domain-containing protein.	DUF663-domain-containing protein.	0.996
A0A5C3QFY3	A0A5C3QGW0	Nop domain-containing protein.	Utp14 protein-domain-containing protein.	0.996
A0A5C3QFY3	A0A5C3QH79	Nop domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.992
A0A5C3QFY3	A0A5C3QL87	Nop domain-containing protein.	Brix-domain-containing protein.	0.991
A0A5C3QFY3	A0A5C3QMW8	Nop domain-containing protein.	Small-subunit processome.	0.993
A0A5C3QFY3	A0A5C3QP45	Nop domain-containing protein.	Sas10 C-terminal domain-containing protein.	0.991
A0A5C3QFY3	A0A5C3QQH1	Nop domain-containing protein.	NUC153 domain-containing protein.	0.990
A0A5C3QFY3	A0A5C3QWL7	Nop domain-containing protein.	WD40-repeat-containing domain protein.	0.999
A0A5C3QFY3	A0A5C3QYA6	Nop domain-containing protein.	Uncharacterized protein.	0.932
A0A5C3QFY3	A0A5C3R0Q9	Nop domain-containing protein.	Uncharacterized protein.	0.976