STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C3QZS3Ribosomal RNA-processing protein 7-domain-containing protein. (313 aa)    
Predicted Functional Partners:
A0A5C3QUV5
U3 small nucleolar RNA-associated protein 22.
   
 0.998
A0A5C3R0E5
WD40-repeat-containing domain protein.
   
 0.998
A0A5C3Q6B6
DUF663-domain-containing protein.
   
 0.997
A0A5C3QH79
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.997
A0A5C3Q2F9
WD40-repeat-containing domain protein.
   
 0.996
A0A5C3QC93
WD40-repeat-containing domain protein.
   
 0.996
A0A5C3QN18
WD40 repeat-like protein.
   
 0.996
A0A5C3QY33
U3 small nucleolar RNA-associated protein.
   
 0.996
A0A5C3QYG2
Uncharacterized protein.
   
 0.996
A0A5C3QYK5
WD40-repeat-containing domain protein.
   
 0.996
Your Current Organism:
Pterula gracilis
NCBI taxonomy Id: 1884261
Other names: Hirsutella gracilis, P. gracilis, Pistillaria gracilis, Typhula gracilis
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