Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF74459.1 | SFF75826.1 | SAMN05518801_101170 | SAMN05518801_101289 | Protein of unknown function. | Negative regulator of flagellin synthesis FlgM. | 0.887 |
SFF74459.1 | SFF86072.1 | SAMN05518801_101170 | SAMN05518801_102265 | Protein of unknown function. | Ankyrin repeat-containing protein. | 0.868 |
SFF74459.1 | SFG10948.1 | SAMN05518801_101170 | SAMN05518801_107169 | Protein of unknown function. | Metallo-beta-lactamase family protein. | 0.989 |
SFF74459.1 | SFG20785.1 | SAMN05518801_101170 | SAMN05518801_11075 | Protein of unknown function. | Superfamily II DNA or RNA helicase, SNF2 family. | 0.890 |
SFF74459.1 | SFG53243.1 | SAMN05518801_101170 | SAMN05518801_1447 | Protein of unknown function. | Hypothetical protein. | 0.874 |
SFF74459.1 | alaS | SAMN05518801_101170 | SAMN05518801_11317 | Protein of unknown function. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.990 |
SFF74459.1 | rplF | SAMN05518801_101170 | SAMN05518801_107146 | Protein of unknown function. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.915 |
SFF74459.1 | rpoA | SAMN05518801_101170 | SAMN05518801_107133 | Protein of unknown function. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.870 |
SFF74459.1 | rpoB | SAMN05518801_101170 | SAMN05518801_101575 | Protein of unknown function. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.888 |
SFF74459.1 | rpoZ | SAMN05518801_101170 | SAMN05518801_10495 | Protein of unknown function. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.869 |
SFF75826.1 | SFF74459.1 | SAMN05518801_101289 | SAMN05518801_101170 | Negative regulator of flagellin synthesis FlgM. | Protein of unknown function. | 0.887 |
SFF86072.1 | SFF74459.1 | SAMN05518801_102265 | SAMN05518801_101170 | Ankyrin repeat-containing protein. | Protein of unknown function. | 0.868 |
SFF86072.1 | SFG20785.1 | SAMN05518801_102265 | SAMN05518801_11075 | Ankyrin repeat-containing protein. | Superfamily II DNA or RNA helicase, SNF2 family. | 0.412 |
SFF86072.1 | SFG53243.1 | SAMN05518801_102265 | SAMN05518801_1447 | Ankyrin repeat-containing protein. | Hypothetical protein. | 0.412 |
SFF86072.1 | alaS | SAMN05518801_102265 | SAMN05518801_11317 | Ankyrin repeat-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.489 |
SFG10948.1 | SFF74459.1 | SAMN05518801_107169 | SAMN05518801_101170 | Metallo-beta-lactamase family protein. | Protein of unknown function. | 0.989 |
SFG10948.1 | SFG20785.1 | SAMN05518801_107169 | SAMN05518801_11075 | Metallo-beta-lactamase family protein. | Superfamily II DNA or RNA helicase, SNF2 family. | 0.419 |
SFG10948.1 | SFG53243.1 | SAMN05518801_107169 | SAMN05518801_1447 | Metallo-beta-lactamase family protein. | Hypothetical protein. | 0.419 |
SFG10948.1 | rpoA | SAMN05518801_107169 | SAMN05518801_107133 | Metallo-beta-lactamase family protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.849 |
SFG10948.1 | rpoB | SAMN05518801_107169 | SAMN05518801_101575 | Metallo-beta-lactamase family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.869 |
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