STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ11438.1Hemolysin activation/secretion protein. (531 aa)    
Predicted Functional Partners:
SEI87641.1
Outer membrane autotransporter barrel domain-containing protein.
 
 0.759
SEJ11415.1
Hypothetical protein.
       0.752
SEJ34703.1
Right handed beta helix region.
  
 0.605
SEJ33540.1
Ca2+-binding protein, RTX toxin-related.
  
  
 0.508
SEJ25669.1
alpha-L-rhamnosidase.
  
 0.488
SEJ55714.1
Hypothetical protein.
  
 0.488
SEJ72689.1
AAA domain-containing protein.
  
 0.488
SEJ73551.1
alpha-L-rhamnosidase.
  
 0.488
SEJ91345.1
alpha-L-rhamnosidase.
  
 0.488
SEK00515.1
alpha-L-rhamnosidase.
  
 0.488
Your Current Organism:
Sphingobium sp. AP50
NCBI taxonomy Id: 1884369
Other names: S. sp. AP50
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.