SEJ93281.1 protein (Sphingobium sp. AP50) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEJ93281.1

Phosphate-selective porin OprO and OprP. (491 aa)

Predicted Functional Partners:

SEJ93272.1

0.880

SEJ93289.1

0.768

SEI83094.1

0.743

SEJ56099.1

0.742

SEJ80808.1

0.740

SEJ93298.1

0.734

SEJ31943.1

0.733

SEJ93067.1

0.722

SEJ76823.1

0.708

SEI65578.1

0.703

Your Current Organism:

Sphingobium sp. AP50

NCBI taxonomy Id: 1884369
Other names: S. sp. AP50

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEI65578.1	SEI83094.1	SAMN05518849_101442	SAMN05518849_1011051	Methyltransferase domain-containing protein.	Outer membrane receptor proteins, mostly Fe transport.	0.700
SEI65578.1	SEJ31943.1	SAMN05518849_101442	SAMN05518849_10537	Methyltransferase domain-containing protein.	Acyltransferase family protein.	0.742
SEI65578.1	SEJ56099.1	SAMN05518849_101442	SAMN05518849_108176	Methyltransferase domain-containing protein.	Glycosyl transferase family 21.	0.753
SEI65578.1	SEJ76823.1	SAMN05518849_101442	SAMN05518849_11364	Methyltransferase domain-containing protein.	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	0.727
SEI65578.1	SEJ80808.1	SAMN05518849_101442	SAMN05518849_11449	Methyltransferase domain-containing protein.	Superfamily II DNA or RNA helicase.	0.762
SEI65578.1	SEJ93067.1	SAMN05518849_101442	SAMN05518849_11915	Methyltransferase domain-containing protein.	Ca2+-binding protein, EF-hand superfamily.	0.748
SEI65578.1	SEJ93281.1	SAMN05518849_101442	SAMN05518849_11933	Methyltransferase domain-containing protein.	Phosphate-selective porin OprO and OprP.	0.703
SEI83094.1	SEI65578.1	SAMN05518849_1011051	SAMN05518849_101442	Outer membrane receptor proteins, mostly Fe transport.	Methyltransferase domain-containing protein.	0.700
SEI83094.1	SEJ31943.1	SAMN05518849_1011051	SAMN05518849_10537	Outer membrane receptor proteins, mostly Fe transport.	Acyltransferase family protein.	0.737
SEI83094.1	SEJ56099.1	SAMN05518849_1011051	SAMN05518849_108176	Outer membrane receptor proteins, mostly Fe transport.	Glycosyl transferase family 21.	0.727
SEI83094.1	SEJ76823.1	SAMN05518849_1011051	SAMN05518849_11364	Outer membrane receptor proteins, mostly Fe transport.	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	0.702
SEI83094.1	SEJ80808.1	SAMN05518849_1011051	SAMN05518849_11449	Outer membrane receptor proteins, mostly Fe transport.	Superfamily II DNA or RNA helicase.	0.740
SEI83094.1	SEJ93067.1	SAMN05518849_1011051	SAMN05518849_11915	Outer membrane receptor proteins, mostly Fe transport.	Ca2+-binding protein, EF-hand superfamily.	0.709
SEI83094.1	SEJ93281.1	SAMN05518849_1011051	SAMN05518849_11933	Outer membrane receptor proteins, mostly Fe transport.	Phosphate-selective porin OprO and OprP.	0.743
SEJ31943.1	SEI65578.1	SAMN05518849_10537	SAMN05518849_101442	Acyltransferase family protein.	Methyltransferase domain-containing protein.	0.742
SEJ31943.1	SEI83094.1	SAMN05518849_10537	SAMN05518849_1011051	Acyltransferase family protein.	Outer membrane receptor proteins, mostly Fe transport.	0.737
SEJ31943.1	SEJ56099.1	SAMN05518849_10537	SAMN05518849_108176	Acyltransferase family protein.	Glycosyl transferase family 21.	0.777
SEJ31943.1	SEJ76823.1	SAMN05518849_10537	SAMN05518849_11364	Acyltransferase family protein.	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	0.763
SEJ31943.1	SEJ80808.1	SAMN05518849_10537	SAMN05518849_11449	Acyltransferase family protein.	Superfamily II DNA or RNA helicase.	0.773
SEJ31943.1	SEJ93067.1	SAMN05518849_10537	SAMN05518849_11915	Acyltransferase family protein.	Ca2+-binding protein, EF-hand superfamily.	0.758