STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX14792.1Rhamnulokinase. (490 aa)    
Predicted Functional Partners:
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
 
 0.998
SDX14733.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.983
fucI
L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
 
 0.952
fucI-2
L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
 
 0.952
SDX38776.1
L-fucose mutarotase; Belongs to the RbsD / FucU family.
 
 
 0.861
SDW49012.1
L-rhamnose mutarotase.
 
  
 0.806
SDX14752.1
Hypothetical protein.
 
     0.784
SDW68767.1
L-ribulose 5-phosphate 4-epimerase.
  
 
 0.717
SDY01148.1
L-rhamnose mutarotase.
 
  
 0.701
mtnB
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
  
 
 0.663
Your Current Organism:
Paenibacillus sp. CF384
NCBI taxonomy Id: 1884382
Other names: P. sp. CF384
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