EGW08_002955 protein (Elysia chlorotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EGW08_002955

Uncharacterized protein. (253 aa)

Predicted Functional Partners:

EGW08_021784

0.681

EGW08_022478

0.657

EGW08_002532

0.648

EGW08_019387

0.621

EGW08_007722

0.560

EGW08_013271

0.523

EGW08_022156

0.520

EGW08_012375

0.520

EGW08_008110

0.520

EGW08_018816

0.511

Your Current Organism:

Elysia chlorotica

NCBI taxonomy Id: 188477
Other names: E. chlorotica, eastern emerald elysia, emerald elysia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGW08_002532	EGW08_002955	A0A3S1A3I9	A0A433U623	Uncharacterized protein.	Uncharacterized protein.	0.648
EGW08_002532	EGW08_007722	A0A3S1A3I9	A0A433TSG6	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.773
EGW08_002532	EGW08_008110	A0A3S1A3I9	A0A433TRN2	Uncharacterized protein.	Uncharacterized protein.	0.765
EGW08_002532	EGW08_012375	A0A3S1A3I9	A0A433TE40	Uncharacterized protein.	Uncharacterized protein.	0.765
EGW08_002532	EGW08_018816	A0A3S1A3I9	A0A433SW60	Uncharacterized protein.	Uncharacterized protein.	0.806
EGW08_002532	EGW08_019387	A0A3S1A3I9	A0A3S1AUW0	Uncharacterized protein.	Uncharacterized protein.	0.829
EGW08_002532	EGW08_021784	A0A3S1A3I9	A0A3S0Z4E8	Uncharacterized protein.	Uncharacterized protein.	0.813
EGW08_002532	EGW08_022156	A0A3S1A3I9	A0A433SLN6	Uncharacterized protein.	Uncharacterized protein.	0.765
EGW08_002532	EGW08_022478	A0A3S1A3I9	A0A3S0Z9B0	Uncharacterized protein.	Uncharacterized protein.	0.769
EGW08_002955	EGW08_002532	A0A433U623	A0A3S1A3I9	Uncharacterized protein.	Uncharacterized protein.	0.648
EGW08_002955	EGW08_007722	A0A433U623	A0A433TSG6	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.560
EGW08_002955	EGW08_008110	A0A433U623	A0A433TRN2	Uncharacterized protein.	Uncharacterized protein.	0.520
EGW08_002955	EGW08_012375	A0A433U623	A0A433TE40	Uncharacterized protein.	Uncharacterized protein.	0.520
EGW08_002955	EGW08_013271	A0A433U623	A0A3S1BAK3	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.523
EGW08_002955	EGW08_018816	A0A433U623	A0A433SW60	Uncharacterized protein.	Uncharacterized protein.	0.511
EGW08_002955	EGW08_019387	A0A433U623	A0A3S1AUW0	Uncharacterized protein.	Uncharacterized protein.	0.621
EGW08_002955	EGW08_021784	A0A433U623	A0A3S0Z4E8	Uncharacterized protein.	Uncharacterized protein.	0.681
EGW08_002955	EGW08_022156	A0A433U623	A0A433SLN6	Uncharacterized protein.	Uncharacterized protein.	0.520
EGW08_002955	EGW08_022478	A0A433U623	A0A3S0Z9B0	Uncharacterized protein.	Uncharacterized protein.	0.657
EGW08_007722	EGW08_002532	A0A433TSG6	A0A3S1A3I9	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.773