STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG05850.13',5'-cyclic AMP phosphodiesterase CpdA. (334 aa)    
Predicted Functional Partners:
SMG05853.1
Exonuclease III.
 
     0.929
SMG48198.1
Predicted ATPase.
  
 
 0.913
SMG06436.1
TolB amino-terminal domain-containing protein.
    
 0.811
SMG05839.1
4-methylaminobutanoate oxidase (formaldehyde-forming).
 
     0.801
SMG36987.1
Cephalosporin-C deacetylase.
 
  
  0.799
SMG06430.1
TolB amino-terminal domain-containing protein.
    
  0.795
SMG05782.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
  
  0.783
SMG05779.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
  
  0.778
SMG36392.1
Signal transduction histidine kinase.
  
 
 0.766
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
     
 0.755
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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