STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG07028.1Tetratricopeptide repeat-containing protein. (735 aa)    
Predicted Functional Partners:
SMG52800.1
Two component transcriptional regulator, LytTR family.
  
  0.949
SMG07030.1
Two component transcriptional regulator, LytTR family.
 
  0.928
SMG07014.1
Von Willebrand factor type A domain-containing protein.
 
     0.827
SMG48204.1
Two component transcriptional regulator, LytTR family.
 
  0.820
SMG52660.1
Two component transcriptional regulator, LytTR family.
  
  0.813
SMG25693.1
Two component transcriptional regulator, LytTR family.
  
  0.811
SMG12633.1
Two component transcriptional regulator, LytTR family.
  
  0.809
SMG48046.1
Two component transcriptional regulator, LytTR family.
  
  0.809
SMG48157.1
Two component transcriptional regulator, LytTR family.
  
  0.804
SMG40791.1
Two component transcriptional regulator, LytTR family.
  
  0.779
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.