STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG12276.1DNA-binding transcriptional regulator, AcrR family. (218 aa)    
Predicted Functional Partners:
SMG12259.1
Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family.
 
     0.952
SMG12171.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.802
SMG12247.1
Hypothetical protein.
 
     0.773
SMG12253.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.743
SMG12195.1
TIGR03643 family protein.
 
     0.631
SMG12176.1
Hypothetical protein.
 
     0.470
SMG30895.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.457
SMG25517.1
Anti-sigma-K factor rskA.
  
     0.438
SMG12128.1
Hypothetical protein.
 
     0.428
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.