STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG12331.1TIGR01666 family membrane protein. (716 aa)    
Predicted Functional Partners:
SMG06366.1
Multidrug resistance efflux pump.
  
 
 0.621
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.554
SMG12741.1
Hypothetical protein.
  
     0.543
SMG23910.1
Arsenate reductase, glutaredoxin family; Belongs to the ArsC family.
  
     0.491
SMG32630.1
DNA-binding transcriptional regulator GbsR, MarR family.
  
     0.482
SMG12316.1
B12 binding domain-containing protein.
  
    0.458
SMG32692.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
  
 0.455
nhaA
Na+:H+ antiporter, NhaA family; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.434
SMG24070.1
Hypothetical protein.
  
     0.432
SMG24004.1
Hypothetical protein.
  
     0.422
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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