STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG12483.1Arylsulfatase A. (473 aa)    
Predicted Functional Partners:
SMG09414.1
BNR repeat-like domain-containing protein.
    
  0.804
SMG13863.1
Sialidase-1.
    
  0.804
SMG30363.1
Sialidase-1.
    
  0.804
SMG13784.1
Sialidase-1.
    
  0.772
SMG40679.1
Sialidase-1.
    
  0.772
SMG39229.1
Arylsulfatase A.
  
  
 
0.735
SMG18197.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
  
 
   0.626
SMG12492.1
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.508
SMG19790.1
Arylsulfatase A.
  
  
 
0.486
SMG42194.1
Arylsulfatase A.
  
  
 
0.482
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.