STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG13976.1Two component transcriptional regulator, LytTR family. (241 aa)    
Predicted Functional Partners:
SMG13968.1
Sensor histidine kinase YesM.
 
  0.961
SMG52818.1
Putative regulator of cell autolysis.
  
  0.840
SMG40788.1
Histidine kinase.
  
  0.838
SMG45292.1
GHKL domain-containing protein.
  
  0.836
SMG13076.1
Histidine kinase.
  
  0.835
SMG24045.1
GHKL domain-containing protein.
  
  0.835
SMG27530.1
DNA-binding response regulator, LytR/AlgR family.
  
  
  0.805
SMG18251.1
Hypothetical protein.
    
 0.788
SMG44512.1
Signal transduction histidine kinase.
    
 0.788
SMG48680.1
Signal transduction histidine kinase.
    
 0.788
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.