STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG18256.1Predicted dehydrogenase. (454 aa)    
Predicted Functional Partners:
SMG18248.1
Protein of unknown function.
 
     0.661
SMG18192.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.568
SMG18260.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.516
SMG18238.1
Hexosaminidase.
 
     0.484
SMG05907.1
Phosphotransferase enzyme family protein.
 
  
  0.470
SMG25986.1
Sugar phosphate isomerase/epimerase.
  
 
  0.457
SMG08612.1
Hexosaminidase.
  
     0.452
SMG18251.1
Hypothetical protein.
       0.451
SMG19128.1
Hexosaminidase.
  
     0.449
SMG20946.1
Sugar phosphate isomerase/epimerase.
  
 
  0.449
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.