SMG19449.1 protein (Arenibacter troitsensis)

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SMG19449.1

Gliding-associated putative ABC transporter substrate-binding component GldG. (554 aa)

Predicted Functional Partners:

SMG19448.1

0.997

SMG31446.1

0.854

SMG19438.1

0.846

SMG07689.1

0.832

SMG39149.1

0.821

SMG19433.1

0.813

SMG07813.1

0.799

SMG44023.1

0.721

SMG29882.1

0.690

SMG47348.1

0.648

Your Current Organism:

Arenibacter troitsensis

NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMG07689.1	SMG07813.1	SAMN03080602_00263	SAMN03080602_00281	ABC-2 type transport system ATP-binding protein.	Gliding motility-associated lipoprotein GldB.	0.401
SMG07689.1	SMG19448.1	SAMN03080602_00263	SAMN03080602_01229	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.947
SMG07689.1	SMG19449.1	SAMN03080602_00263	SAMN03080602_01230	ABC-2 type transport system ATP-binding protein.	Gliding-associated putative ABC transporter substrate-binding component GldG.	0.832
SMG07689.1	SMG31446.1	SAMN03080602_00263	SAMN03080602_02191	ABC-2 type transport system ATP-binding protein.	Gliding motility-associated lipoprotein GldD.	0.587
SMG07689.1	SMG39149.1	SAMN03080602_00263	SAMN03080602_02830	ABC-2 type transport system ATP-binding protein.	Gliding motility-associated lipoprotein GldJ.	0.570
SMG07813.1	SMG07689.1	SAMN03080602_00281	SAMN03080602_00263	Gliding motility-associated lipoprotein GldB.	ABC-2 type transport system ATP-binding protein.	0.401
SMG07813.1	SMG19448.1	SAMN03080602_00281	SAMN03080602_01229	Gliding motility-associated lipoprotein GldB.	ABC-2 type transport system permease protein.	0.578
SMG07813.1	SMG19449.1	SAMN03080602_00281	SAMN03080602_01230	Gliding motility-associated lipoprotein GldB.	Gliding-associated putative ABC transporter substrate-binding component GldG.	0.799
SMG07813.1	SMG29882.1	SAMN03080602_00281	SAMN03080602_01987	Gliding motility-associated lipoprotein GldB.	Gliding motility-associated protein GldL.	0.816
SMG07813.1	SMG31446.1	SAMN03080602_00281	SAMN03080602_02191	Gliding motility-associated lipoprotein GldB.	Gliding motility-associated lipoprotein GldD.	0.835
SMG07813.1	SMG39149.1	SAMN03080602_00281	SAMN03080602_02830	Gliding motility-associated lipoprotein GldB.	Gliding motility-associated lipoprotein GldJ.	0.832
SMG07813.1	SMG44023.1	SAMN03080602_00281	SAMN03080602_03234	Gliding motility-associated lipoprotein GldB.	Gliding motility-associated lipoprotein GldH.	0.765
SMG07813.1	SMG47348.1	SAMN03080602_00281	SAMN03080602_03588	Gliding motility-associated lipoprotein GldB.	Hypothetical protein.	0.707
SMG19433.1	SMG19438.1	SAMN03080602_01227	SAMN03080602_01228	Hypothetical protein.	Quinol monooxygenase YgiN.	0.813
SMG19433.1	SMG19448.1	SAMN03080602_01227	SAMN03080602_01229	Hypothetical protein.	ABC-2 type transport system permease protein.	0.840
SMG19433.1	SMG19449.1	SAMN03080602_01227	SAMN03080602_01230	Hypothetical protein.	Gliding-associated putative ABC transporter substrate-binding component GldG.	0.813
SMG19438.1	SMG19433.1	SAMN03080602_01228	SAMN03080602_01227	Quinol monooxygenase YgiN.	Hypothetical protein.	0.813
SMG19438.1	SMG19448.1	SAMN03080602_01228	SAMN03080602_01229	Quinol monooxygenase YgiN.	ABC-2 type transport system permease protein.	0.797
SMG19438.1	SMG19449.1	SAMN03080602_01228	SAMN03080602_01230	Quinol monooxygenase YgiN.	Gliding-associated putative ABC transporter substrate-binding component GldG.	0.846
SMG19448.1	SMG07689.1	SAMN03080602_01229	SAMN03080602_00263	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.947

page 1 of 4

Network Stats

number of nodes:

5

number of edges:

7

average node degree:

2.8

avg. local clustering coefficient:

0.8

expected number of edges:

7

PPI enrichment p-value:

0.476

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045454

Cell redox homeostasis

3 of 9

2.06

1.21

0.0048

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016667

Oxidoreductase activity, acting on a sulfur group of donors

4 of 20

1.84

1.7

0.00027

GO:0016668

Oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor

3 of 9

2.06

1.47

0.0014

GO:0004148

Dihydrolipoyl dehydrogenase activity

2 of 2

2.54

1.15

0.0080

GO:0050660

Flavin adenine dinucleotide binding

3 of 37

1.45

0.76

0.0236

GO:0016491

Oxidoreductase activity

7 of 292

0.92

0.75

0.0014

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:701

Thioredoxin domain, and Cellular response to oxidative stress

5 of 11

2.2

3.25

2.41e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00380

Tryptophan metabolism

2 of 9

1.89

0.83

0.0254

map00310

Lysine degradation

2 of 9

1.89

0.83

0.0254

map00630

Glyoxylate and dicarboxylate metabolism

3 of 39

1.42

0.75

0.0239

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0676

Redox-active center

4 of 11

2.1

2.44

1.16e-05

KW-0274

FAD

3 of 25

1.62

1.11

0.0043

KW-0560

Oxidoreductase

6 of 166

1.1

1.01

0.00034

KW-0520

NAD

3 of 41

1.4

0.88

0.0103

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF02852

Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

3 of 4

2.41

1.86

0.00033

PF00578

AhpC/TSA family

3 of 8

2.11

1.61

0.00078

PF13738

Pyridine nucleotide-disulphide oxidoreductase

2 of 3

2.36

1.02

0.0135

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036249

Thioredoxin-like superfamily

5 of 27

1.81

2.12

1.97e-05

IPR013766

Thioredoxin domain

4 of 13

2.03

2.07

6.44e-05

IPR012999

Pyridine nucleotide-disulphide oxidoreductase, class I, active site

3 of 3

2.54

2.03

0.00017

IPR001100

Pyridine nucleotide-disulphide oxidoreductase, class I

3 of 3

2.54

2.03

0.00017

IPR016156

FAD/NAD-linked reductase, dimerisation domain superfamily

3 of 4

2.41

2.0

0.00018

(more ...)

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