STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG26675.1Hypothetical protein. (439 aa)    
Predicted Functional Partners:
SMG35866.1
Preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.733
SMG36381.1
Acyl-CoA-binding protein.
  
 
   0.732
SMG50198.1
Hypothetical protein.
  
     0.731
SMG06145.1
Hypothetical protein.
  
     0.727
SMG24626.1
Hypothetical protein.
  
     0.714
SMG24347.1
Adenylyltransferase and sulfurtransferase.
   
 0.705
SMG11916.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
     0.700
SMG19292.1
Hypothetical protein.
    
  0.700
SMG09619.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.696
SMG11137.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.
   
 0.693
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.