STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG30287.1Peptidyl-prolyl cis-trans isomerase D. (705 aa)    
Predicted Functional Partners:
SMG30316.1
Hypothetical protein.
 
 
   0.812
SMG30312.1
LPS export ABC transporter protein LptC.
 
     0.777
SMG52151.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
     0.748
SMG09741.1
Tetratricopeptide repeat-containing protein.
  
    0.720
SMG08308.1
Surface antigen.
 
 
 0.698
SMG33304.1
Hypothetical protein.
 
     0.698
SMG49518.1
Lipoprotein-releasing system permease protein.
  
     0.689
SMG51325.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 0.685
SMG51576.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 0.685
SMG30321.1
Long-chain fatty acid transport protein.
 
     0.684
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.