STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG36757.1Collagen triple helix repeat-containing protein. (1182 aa)    
Predicted Functional Partners:
SMG36764.1
Hypothetical protein.
   
  0.787
SMG36770.1
Hypothetical protein.
   
  0.787
SMG36774.1
Hypothetical protein.
      0.703
SMG52519.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.569
SMG36778.1
Gliding motility-associated C-terminal domain-containing protein.
   
   0.511
SMG36564.1
Aspartyl protease.
   
  0.470
SMG53137.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.463
SMG20866.1
Peptidase family S41.
   
  0.451
SMG30182.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
  0.451
SMG37292.1
Hypothetical protein.
    
   0.451
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.