STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG43697.1GH3 auxin-responsive promoter. (502 aa)    
Predicted Functional Partners:
SMG06737.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
     
 0.784
SMG43707.1
Peptidase family M23.
       0.773
SMG25001.1
Acyl-CoA reductase (LuxC).
  
 
  0.764
SMG07878.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.726
SMG43771.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.723
SMG20073.1
Capsular exopolysaccharide family.
    
  0.703
SMG27366.1
Capsular exopolysaccharide family.
    
  0.703
SMG30927.1
uroporphyrinogen-III synthase.
  
     0.660
SMG44264.1
Protein of unknown function.
  
     0.636
SMG43690.1
Hypothetical protein.
       0.624
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.