STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG45292.1GHKL domain-containing protein. (338 aa)    
Predicted Functional Partners:
SMG45297.1
Two component transcriptional regulator, LytTR family.
 
  0.961
SMG52800.1
Two component transcriptional regulator, LytTR family.
  
  0.882
SMG48204.1
Two component transcriptional regulator, LytTR family.
 
  0.846
SMG07030.1
Two component transcriptional regulator, LytTR family.
 
  0.842
SMG36397.1
Two component transcriptional regulator, LytTR family.
  
  0.837
SMG40791.1
Two component transcriptional regulator, LytTR family.
  
  0.837
SMG12633.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SMG13976.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SMG25693.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SMG48046.1
Two component transcriptional regulator, LytTR family.
  
  0.835
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.