STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG47342.1Patatin-like phospholipase. (297 aa)    
Predicted Functional Partners:
SMG47331.1
Aminopeptidase N.
       0.790
SMG47338.1
Patatin-like phospholipase.
 
    
0.781
SMG26160.1
Helicase conserved C-terminal domain-containing protein.
  
     0.654
SMG44769.1
MORN repeat variant.
  
     0.640
SMG47315.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.603
SMG47321.1
Hypothetical protein.
       0.603
SMG24556.1
Helicase conserved C-terminal domain-containing protein.
  
     0.550
SMG52647.1
Hypothetical protein.
  
     0.532
SMG47404.1
Hypothetical protein.
  
     0.527
SMG36840.1
Hypothetical protein.
  
     0.510
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.