STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG47669.14-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family. (270 aa)    
Predicted Functional Partners:
SMG17550.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 0.751
SMG45373.1
Altronate hydrolase.
 
  0.718
SMG21728.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
  0.702
SMG49355.1
Galactonate dehydratase.
 
 
 0.676
SMG47671.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.675
SMG27312.1
Altronate hydrolase.
 
 
  0.666
SMG47659.1
Calcineurin-like phosphoesterase.
 
     0.654
SMG36954.1
Hypothetical protein.
 
     0.617
SMG47665.1
Hypothetical protein.
       0.605
SMG40799.1
Two component regulator propeller.
  
     0.557
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
Server load: low (18%) [HD]