STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG49952.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (429 aa)    
Predicted Functional Partners:
SMG20088.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 0.916
SMG20311.1
UDP-glucose 4-epimerase.
 
 
 0.888
SMG20323.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.812
SMG49965.1
Predicted dehydrogenase.
 
  0.810
SMG43671.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.795
SMG43771.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
  0.707
SMG49947.1
Predicted neuraminidase (sialidase).
       0.693
SMG20358.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 0.655
SMG05920.1
UTP-glucose-1-phosphate uridylyltransferase.
  
  
 0.623
SMG49906.1
exo-1,4-beta-D-glucosaminidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.613
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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