STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG49982.1Uncharacterized membrane protein. (468 aa)    
Predicted Functional Partners:
SMG49974.1
Protein of unknown function.
 
     0.921
SMG41242.1
Hypothetical protein.
     0.782
SMG49971.1
Planctomycete cytochrome C.
 
    
0.777
SMG13035.1
Protein of unknown function.
 
     0.776
SMG29750.1
Protein of unknown function.
 
     0.776
SMG29755.1
Planctomycete cytochrome C.
 
     0.776
SMG41218.1
Planctomycete cytochrome C.
 
     0.776
SMG41230.1
Protein of unknown function.
 
     0.776
SMG29738.1
Protein of unknown function.
 
     0.775
SMG29744.1
Planctomycete cytochrome C.
 
     0.775
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.