STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG53313.1SnoaL-like polyketide cyclase. (306 aa)    
Predicted Functional Partners:
SMG53310.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.762
SMG25946.1
Helix-turn-helix domain-containing protein.
  
     0.681
SMG53332.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
     0.632
SMG53320.1
Hypothetical protein.
       0.590
SMG17441.1
Hypothetical protein.
      0.576
SMG53335.1
Two component transcriptional regulator, LytTR family.
 
     0.561
SMG33185.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.537
SMG46330.1
Adenylate cyclase, class 3.
  
     0.531
SMG45177.1
Transposase DDE domain-containing protein.
  
     0.507
SMG53306.1
Hypothetical protein.
       0.430
Your Current Organism:
Arenibacter troitsensis
NCBI taxonomy Id: 188872
Other names: A. troitsensis, Arenibacter trinitatis, Arenibacter troitsensis Nedashkovskaya et al. 2003, DSM 19835, JCM 11736, KMM 3674, NBRC 101532
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