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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANB05328.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)    
Predicted Functional Partners:
ssgA
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.854
whiG
RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.850
pyrR
Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
     
 0.831
ANB05379.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.775
ANB08887.1
BldB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.765
ANB06670.1
Sporulation protein SsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.759
whiA
Sporulation protein; Involved in cell division and chromosome segregation.
      
 0.756
ANB09681.1
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.744
ANB06551.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.718
ANB07146.1
Aerial mycelium formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.716
Your Current Organism:
Streptomyces ambofaciens
NCBI taxonomy Id: 1889
Other names: ATCC 23877, BCRC 11857, CBS 616.68, CCRC 11857, CCRC:11857, CECT 3101, DSM 40053, IFO 12836, ISP 5053, JCM 4204, JCM 4618, KCTC 9111, NBRC 12836, NRRL 2420, NRRL B-2516, NRRL-ISP 5053, S. ambofaciens
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