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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANB05888.1Citrate lyase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (274 aa)    
Predicted Functional Partners:
ANB05887.1
acyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
 
  
 0.954
ANB05885.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.927
ANB09491.1
Citrate (pro-3S)-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.927
ANB05886.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
ANB05884.1
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.912
ANB05883.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
fucA
Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.689
novR
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.689
ANB05882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.681
ANB06919.1
PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.618
Your Current Organism:
Streptomyces ambofaciens
NCBI taxonomy Id: 1889
Other names: ATCC 23877, BCRC 11857, CBS 616.68, CCRC 11857, CCRC:11857, CECT 3101, DSM 40053, IFO 12836, ISP 5053, JCM 4204, JCM 4618, KCTC 9111, NBRC 12836, NRRL 2420, NRRL B-2516, NRRL-ISP 5053, S. ambofaciens
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