Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
actIIHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)    
Predicted Functional Partners:
ecrA
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.833
yxjL-6
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.831
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.741
srm10
Polyketide synthase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.580
afsR-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.521
dasR
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.494
ANB06320.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
cgc19
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.435
Your Current Organism:
Streptomyces ambofaciens
NCBI taxonomy Id: 1889
Other names: ATCC 23877, BCRC 11857, CBS 616.68, CCRC 11857, CCRC:11857, CECT 3101, DSM 40053, IFO 12836, ISP 5053, JCM 4204, JCM 4618, KCTC 9111, NBRC 12836, NRRL 2420, NRRL B-2516, NRRL-ISP 5053, S. ambofaciens
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