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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANB06590.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)    
Predicted Functional Partners:
ANB05724.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
ANB05001.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.952
pel
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.933
ANB08283.1
Silent information regulator protein Sir2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.902
ANB10176.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.745
ANB06165.1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.723
xlnA
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.689
ANB10239.1
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
manA-2
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.678
ANB09562.1
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.677
Your Current Organism:
Streptomyces ambofaciens
NCBI taxonomy Id: 1889
Other names: ATCC 23877, BCRC 11857, CBS 616.68, CCRC 11857, CCRC:11857, CECT 3101, DSM 40053, IFO 12836, ISP 5053, JCM 4204, JCM 4618, KCTC 9111, NBRC 12836, NRRL 2420, NRRL B-2516, NRRL-ISP 5053, S. ambofaciens
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