Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANB07881.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)    
Predicted Functional Partners:
ANB08295.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
ANB07879.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.769
ANB07880.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.769
ANB07877.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
ANB07882.1
Pilus assembly protein TadG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
ANB07883.1
Septum determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
ANB07884.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.659
ANB07887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
ANB07876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.632
ANB07878.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.604
Your Current Organism:
Streptomyces ambofaciens
NCBI taxonomy Id: 1889
Other names: ATCC 23877, BCRC 11857, CBS 616.68, CCRC 11857, CCRC:11857, CECT 3101, DSM 40053, IFO 12836, ISP 5053, JCM 4204, JCM 4618, KCTC 9111, NBRC 12836, NRRL 2420, NRRL B-2516, NRRL-ISP 5053, S. ambofaciens
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