STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK31095.1D-amino acid dehydrogenase small subunit. (419 aa)    
Predicted Functional Partners:
SEK87972.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.990
SEK87932.1
Sarcosine oxidase subunit delta.
  
 0.873
SEK88012.1
Sarcosine oxidase subunit gamma.
  
  0.823
SEK39957.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.810
SEL32434.1
Quinoprotein glucose dehydrogenase.
  
  
  0.765
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.754
SEK47740.1
Glycine/D-amino acid oxidase.
  
  
  0.752
SEK72241.1
4-hydroxyphenylpyruvate dioxygenase.
   
 
  0.729
SEL34010.1
Xaa-Pro aminopeptidase.
  
 
  0.725
thiG
Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
 
 0.653
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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