STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK31935.1NAD dependent epimerase/dehydratase family protein. (274 aa)    
Predicted Functional Partners:
SEK31975.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
  
 0.873
SEK34213.1
UDP-glucose dehydrogenase.
  
 
 0.803
SEK40572.1
UDP-glucose pyrophosphorylase.
    
 0.800
SEK39119.1
UDP-glucuronate 4-epimerase.
   
 0.730
SEK35070.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.611
SEK34935.1
Polysaccharide biosynthesis protein.
 
   
 0.596
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.559
SEK31848.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.558
SEK31737.1
Acetoin utilization deacetylase AcuC.
       0.556
SEL10271.1
Hypothetical protein.
  
     0.551
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.