STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK32047.1ATP-binding cassette, subfamily B. (614 aa)    
Predicted Functional Partners:
SEK32008.1
23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.814
SEK88234.1
ATP-binding cassette, subfamily B.
  
 
0.797
SEK32082.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
    
0.788
SEK26471.1
ATPase family associated with various cellular activities (AAA).
   
 0.720
SEK32170.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.713
SEK32257.1
Molecular chaperone Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
       0.711
SEK32211.1
NUDIX domain-containing protein; Belongs to the Nudix hydrolase family.
  
    0.703
SEK46392.1
Capsular polysaccharide transport system ATP-binding protein.
   
 0.660
SEK47827.1
ABC-2 type transport system ATP-binding protein.
 
 
0.660
SEK32122.1
Threonine/homoserine/homoserine lactone efflux protein.
       0.648
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.