STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK34649.1Coenzyme F420 hydrogenase subunit beta. (378 aa)    
Predicted Functional Partners:
SEK43178.1
4Fe-4S dicluster domain-containing protein.
  
 0.981
SEK92100.1
Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.977
SEK39957.1
Glutamate synthase (NADPH) large subunit.
  
 0.960
SEK34604.1
Polysaccharide pyruvyl transferase family protein WcaK.
 
     0.951
SEK34557.1
Glycosyltransferase, GT2 family.
 
     0.935
SEK34784.1
Hypothetical protein.
 
     0.842
SEK34693.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.832
SEK34287.1
Exosortase D, VPLPA-CTERM-specific.
 
     0.752
SEK34480.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
     0.710
SEK34339.1
Tetratricopeptide repeat-containing protein.
  
     0.707
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.