STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK54062.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (246 aa)    
Predicted Functional Partners:
SEK54095.1
Protein of unknown function.
 
    0.977
SEK54192.1
Hypothetical protein.
 
  
 0.965
SEK54157.1
Glycoside/pentoside/hexuronide:cation symporter, GPH family.
 
    0.957
SEK54224.1
Hypothetical protein.
 
   
 0.954
SEK39957.1
Glutamate synthase (NADPH) large subunit.
    
  0.749
SEK66132.1
Hypothetical protein.
  
     0.683
SEL23635.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.515
SEL72587.1
7-alpha-hydroxysteroid dehydrogenase.
  
 
  0.507
SEK95498.1
(2-(2, 4-dihydroxy-6-methylphenyl)-2-oxoethyl)-4-hydroxy-2-pyrone synthase.
    
 0.495
SEL56246.1
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.479
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.