STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK54095.1Protein of unknown function. (186 aa)    
Predicted Functional Partners:
SEK54157.1
Glycoside/pentoside/hexuronide:cation symporter, GPH family.
 
 
 0.987
SEK54192.1
Hypothetical protein.
 
  
 0.980
SEK54062.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG.
 
    0.977
SEK54224.1
Hypothetical protein.
 
   
 0.965
SEK96924.1
Outer membrane protein.
  
 0.909
SEL02287.1
Hypothetical protein.
  
 0.757
SEL77345.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.757
yajC
Protein translocase subunit yajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
    
 
 0.533
SEL56246.1
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.506
SEL23635.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.495
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.